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Creators/Authors contains: "Dutta, Anirban"

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  1. As human progenitor cells differentiate into neurons, the activities of many genes change; these changes are maintained within a narrow range, referred to as genome homeostasis. This process, which alters the synchronization of the entire expressed genome, is distorted in neurodevelopmental diseases such as schizophrenia. The coordinated gene activity networks formed by altering sets of genes comprise recurring coordination modules, governed by the entropy-controlling action of nuclear FGFR1, known to be associated with DNA topology. These modules can be modeled as energy-transferring circuits, revealing that genome homeostasis is maintained by reducing oscillations (noise) in gene activity while allowing gene activity changes to be transmitted across networks; this occurs more readily in neuronal committed cells than in neural progenitors. These findings advance a model of an “entangled” global genome acting as a flexible, coordinated homeostatic system that responds to developmental signals, is governed by nuclear FGFR1, and is reprogrammed in disease. 
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  2. Abstract We present optical observations and analysis of the bright type Iax supernova SN 2020udy hosted by NGC 0812. The evolution of the light curve of SN 2020udy is similar to that of other bright type Iax SNe. Analytical modeling of the quasi-bolometric light curves of SN 2020udy suggests that 0.08 ± 0.01Mof56Ni would have been synthesized during the explosion. The spectral features of SN 2020udy are similar to those of the bright members of type Iax class, showing a weak Siiiline. The late-time spectral sequence is mostly dominated by iron group elements with broad emission lines. Abundance tomography modeling of the spectral time series of SN 2020udy usingTARDISindicates stratification in the outer ejecta; however, to confirm this, spectral modeling at a very early phase is required. After maximum light, uniform mixing of chemical elements is sufficient to explain the spectral evolution. Unlike in the case of normal type Ia SNe, the photospheric approximation remains robust until +100 days, requiring an additional continuum source. Overall, the observational features of SN 2020udy are consistent with the deflagration of a carbon–oxygen white dwarf. 
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  3. Abstract We present the optical photometric and spectroscopic analysis of two Type Iax supernovae (SNe), 2018cni and 2020kyg. SN 2018cni is a bright Type Iax SN ( M V ,peak = −17.81 ± 0.21 mag), whereas SN 2020kyg ( M V ,peak = −14.52 ± 0.21 mag) is a faint one. We derive 56 Ni mass of 0.07 and 0.002 M ⊙ and ejecta mass of 0.48 and 0.14 M ⊙ for SNe 2018cni and 2020kyg, respectively. A combined study of the bright and faint Type Iax SNe in R / r -band reveals that the brighter objects tend to have a longer rise time. However, the correlation between the peak luminosity and decline rate shows that bright and faint Type Iax SNe exhibit distinct behavior. Comparison with standard deflagration models suggests that SN 2018cni is consistent with the deflagration of a CO white dwarf, whereas the properties of SN 2020kyg can be better explained by the deflagration of a hybrid CONe white dwarf. The spectral features of both the SNe point to the presence of similar chemical species but with different mass fractions. Our spectral modeling indicates stratification at the outer layers and mixed inner ejecta for both of the SNe. 
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  4. ABSTRACT We present optical photometric and spectroscopic analysis of a Type Iax supernova (SN) 2020rea situated at the brighter luminosity end of Type Iax supernovae (SNe). The light curve decline rate of SN 2020rea is Δm15(g)  = 1.31 ± 0.08 mag which is similar to SNe 2012Z and 2005hk. Modelling the pseudo-bolometric light curve with a radiation diffusion model yields a mass of 56Ni of 0.13 ± 0.01 M⊙ and an ejecta mass of 0.77$$^{+0.11}_{-0.21}$$ M⊙. Spectral features of SN 2020rea during the photospheric phase show good resemblance with SN 2012Z. TARDIS modelling of the early spectra of SN 2020rea reveals a dominance of Iron Group Elements (IGEs). The photospheric velocity of the Si ii line around maximum for SN 2020rea is ∼ 6500 km s−1 which is less than the measured velocity of the Fe ii line and indicates significant mixing. The observed physical properties of SN 2020rea match with the predictions of pure deflagration model of a Chandrasekhar mass C–O white dwarf. The metallicity of the host galaxy around the SN region is 12 + log(O/H)  = 8.56 ± 0.18 dex which is similar to that of SN 2012Z. 
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  5. null (Ed.)
    Abstract Homeostatic control of neuronal excitability by modulation of synaptic inhibition (I) and excitation (E) of the principal neurons is important during brain maturation. The fundamental features of in-utero brain development, including local synaptic E–I ratio and bioenergetics, can be modeled by cerebral organoids (CO) that have exhibited highly regular nested oscillatory network events. Therefore, we evaluated a 'Phase Zero' clinical study platform combining broadband Vis/near-infrared(NIR) spectroscopy and electrophysiology with studying E–I ratio based on the spectral exponent of local field potentials and bioenergetics based on the activity of mitochondrial Cytochrome-C Oxidase (CCO). We found a significant effect of the age of the healthy controls iPSC CO from 23 days to 3 months on the CCO activity (chi-square (2, N = 10) = 20, p = 4.5400e−05), and spectral exponent between 30–50 Hz (chi-square (2, N = 16) = 13.88, p = 0.001). Also, a significant effect of drugs, choline (CHO), idebenone (IDB), R-alpha-lipoic acid plus acetyl- l -carnitine (LCLA), was found on the CCO activity (chi-square (3, N = 10) = 25.44, p = 1.2492e−05), spectral exponent between 1 and 20 Hz (chi-square (3, N = 16) = 43.5, p = 1.9273e−09) and 30–50 Hz (chi-square (3, N = 16) = 23.47, p = 3.2148e−05) in 34 days old CO from schizophrenia (SCZ) patients iPSC. We present the feasibility of a multimodal approach, combining electrophysiology and broadband Vis–NIR spectroscopy, to monitor neurodevelopment in brain organoid models that can complement traditional drug design approaches to test clinically meaningful hypotheses. 
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  6. Abstract We report observations of the optical counterpart of the long gamma-ray burst (GRB) GRB 230812B and its associated supernova (SN) SN 2023pel. The proximity (z= 0.36) and high energy (Eγ,iso∼ 1053erg) make it an important event to study as a probe of the connection between massive star core collapse and relativistic jet formation. With a phenomenological power-law model for the optical afterglow, we find a late-time flattening consistent with the presence of an associated SN. SN 2023pel has an absolute peakr-band magnitude ofMr= −19.46 ± 0.18 mag (about as bright as SN 1998bw) and evolves on quicker timescales. Using a radioactive heating model, we derive a nickel mass powering the SN ofMNi= 0.38 ± 0.01Mand a peak bolometric luminosity ofLbol∼ 1.3 × 1043erg s−1. We confirm SN 2023pel’s classification as a broad-line Type Ic SN with a spectrum taken 15.5 days after its peak in therband and derive a photospheric expansion velocity ofvph= 11,300 ± 1600 km s−1at that phase. Extrapolating this velocity to the time of maximum light, we derive the ejecta massMej= 1.0 ± 0.6Mand kinetic energy E KE = 1.3 1.2 + 3.3 × 10 51 erg . We find that GRB 230812B/SN 2023pel has SN properties that are mostly consistent with the overall GRB-SN population. The lack of correlations found in the GRB-SN population between SN brightness andEγ,isofor their associated GRBs across a broad range of 7 orders of magnitude provides further evidence that the central engine powering the relativistic ejecta is not coupled to the SN powering mechanism in GRB-SN systems. 
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